IL_8FKY_119

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

8FKY|1|L3|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_119 not in the Motif Atlas

Homologous match to IL_9AXU_122

Geometric discrepancy: 0.3562

The information below is about IL_9AXU_122

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

8FKY|1|L3|G|5012
8FKY|1|L3|C|5013
8FKY|1|L3|A|5014
*
8FKY|1|L3|U|5035
8FKY|1|L3|C|5036

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SV

Probable ribosome biogenesis protein RLP24