IL_8FKZ_009
3D structure
- PDB id
- 8FKZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State G)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- UG*CUAA
- Length
- 6 nucleotides
- Bulged bases
- 8FKZ|1|L2|U|94, 8FKZ|1|L2|A|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKZ_009 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.1133
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8FKZ|1|L2|U|51
8FKZ|1|L2|G|52
*
8FKZ|1|L2|C|93
8FKZ|1|L2|U|94
8FKZ|1|L2|A|95
8FKZ|1|L2|A|96
Current chains
- Chain L2
- ITS2 rRNA
Nearby chains
- Chain NL
- Ribosome biogenesis protein NOP53
- Chain SE
- 60S ribosomal protein L7a
- Chain SH
- MKI67 FHA domain-interacting nucleolar phosphoprotein
- Chain SI
- 60S ribosomal protein L7-like 1
- Chain SL
- Ribosomal L1 domain-containing protein 1
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