IL_8FKZ_032

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCCCG*CC

Length

7 nucleotides

Bulged bases

8FKZ|1|L3|C|501, 8FKZ|1|L3|C|502, 8FKZ|1|L3|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_032 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2046

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8FKZ|1|L3|G|500
8FKZ|1|L3|C|501
8FKZ|1|L3|C|502
8FKZ|1|L3|C|503
8FKZ|1|L3|G|504
*
8FKZ|1|L3|C|654
8FKZ|1|L3|C|655

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SA

60S ribosomal protein L4