IL_8FKZ_049

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_049 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.1443

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8FKZ|1|L3|C|1431
8FKZ|1|L3|G|1432
8FKZ|1|L3|A|1433
8FKZ|1|L3|G|1434
*
8FKZ|1|L3|C|1450
8FKZ|1|L3|G|1451
8FKZ|1|L3|A|1452
8FKZ|1|L3|G|1453

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18