IL_8FKZ_058

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_058 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.15

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8FKZ|1|L3|C|1551
8FKZ|1|L3|G|1552
8FKZ|1|L3|A|1553
8FKZ|1|L3|A|1554
8FKZ|1|L3|G|1555
*
8FKZ|1|L3|U|1572
8FKZ|1|L3|G|1573
8FKZ|1|L3|G|1574
8FKZ|1|L3|A|1575
8FKZ|1|L3|G|1576

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LX

60S ribosomal protein L37a