IL_8FKZ_114

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_114 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.1031

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8FKZ|1|L3|U|4638
8FKZ|1|L3|G|4639
8FKZ|1|L3|C|4640
*
8FKZ|1|L3|G|4659
8FKZ|1|L3|G|4660
8FKZ|1|L3|G|4661

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L31

Chain SV

Probable ribosome biogenesis protein RLP24