IL_8FL2_006

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GU*AUC

Length

5 nucleotides

Bulged bases

8FL2|1|L3|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL2_006 not in the Motif Atlas

Homologous match to IL_5TBW_003

Geometric discrepancy: 0.1922

The information below is about IL_5TBW_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8FL2|1|L1|G|143
8FL2|1|L1|U|144
*
8FL2|1|L3|A|12
8FL2|1|L3|U|13
8FL2|1|L3|C|14

Current chains

Chain L1

5.8S rRNA

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain LH

60S ribosomal protein L23a

Chain SE

60S ribosomal protein L7a

Chain SM

Pescadillo homolog