IL_8FL2_059

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8FL2|1|L3|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL2_059 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.2589

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

8FL2|1|L3|C|1590
8FL2|1|L3|U|1591
8FL2|1|L3|G|1592
*
8FL2|1|L3|C|1603
8FL2|1|L3|G|1604

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain LW

60S ribosomal protein L37

Chain NP

Zinc finger protein 593

Chain SR

GTP-binding protein 4