IL_8FL2_126

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCC*G(OMG)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL2_126 not in the Motif Atlas

Geometric match to IL_4E48_005

Geometric discrepancy: 0.128

The information below is about IL_4E48_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8FL2|1|L3|C|3909
8FL2|1|L3|C|3910
8FL2|1|L3|C|3911
*
8FL2|1|L3|G|4391
8FL2|1|L3|OMG|4392
8FL2|1|L3|G|4393

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NC

Nucleolar GTP-binding protein 2

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SA

60S ribosomal protein L4

Chain SR

GTP-binding protein 4