IL_8FL2_145
3D structure
- PDB id
- 8FL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State I1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FL2_145 not in the Motif Atlas
- Geometric match to IL_4WFL_001
- Geometric discrepancy: 0.1393
- The information below is about IL_4WFL_001
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8FL2|1|L3|C|4412
8FL2|1|L3|C|4413
8FL2|1|L3|A|4414
8FL2|1|L3|A|4415
8FL2|1|L3|G|4416
*
8FL2|1|L3|C|4426
8FL2|1|L3|G|4427
8FL2|1|L3|A|4428
8FL2|1|L3|C|4429
8FL2|1|L3|G|4430
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain NB
- Guanine nucleotide-binding protein-like 3
- Chain NF
- Ribosome biogenesis protein NSA2 homolog
- Chain NJ
- Notchless protein homolog 1
- Chain SR
- GTP-binding protein 4
Coloring options: