IL_8FL4_134

3D structure

PDB id

8FL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUACAC*G(OMU)(OMG)UC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL4_134 not in the Motif Atlas

Geometric match to IL_4V88_393

Geometric discrepancy: 0.3504

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8FL4|1|L3|G|4201
8FL4|1|L3|U|4202
8FL4|1|L3|A|4203
8FL4|1|L3|C|4204
8FL4|1|L3|A|4205
8FL4|1|L3|C|4206
*
8FL4|1|L3|G|4226
8FL4|1|L3|OMU|4227
8FL4|1|L3|OMG|4228
8FL4|1|L3|U|4229
8FL4|1|L3|C|4230

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NT

Protein SDA1 homolog

Chain NU

Testis-expressed protein 10