IL_8FL7_048

3D structure

PDB id

8FL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8FL7|1|L3|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL7_048 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.0737

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8FL7|1|L3|C|1467
8FL7|1|L3|C|1468
*
8FL7|1|L3|G|1496
8FL7|1|L3|A|1497
8FL7|1|L3|G|1498

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18

Chain LK

60S ribosomal protein L27a

Chain LM

60S ribosomal protein L29