IL_8FL7_103

3D structure

PDB id

8FL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GCGAAG*UGGAUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL7_103 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1979

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FL7|1|L3|G|2920
8FL7|1|L3|C|2921
8FL7|1|L3|G|2922
8FL7|1|L3|A|2923
8FL7|1|L3|A|2924
8FL7|1|L3|G|2925
*
8FL7|1|L3|U|3272
8FL7|1|L3|G|3273
8FL7|1|L3|G|3274
8FL7|1|L3|A|3275
8FL7|1|L3|U|3276
8FL7|1|L3|C|3277

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L38

Chain NL

Ribosome biogenesis protein NOP53