IL_8FL7_131

3D structure

PDB id

8FL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL7_131 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1356

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8FL7|1|L3|C|4412
8FL7|1|L3|C|4413
8FL7|1|L3|A|4414
8FL7|1|L3|A|4415
8FL7|1|L3|G|4416
*
8FL7|1|L3|C|4426
8FL7|1|L3|G|4427
8FL7|1|L3|A|4428
8FL7|1|L3|C|4429
8FL7|1|L3|G|4430

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SR

GTP-binding protein 4