IL_8FLA_076

3D structure

PDB id

8FLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8FLA|1|L3|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLA_076 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.2599

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8FLA|1|L3|G|1946
8FLA|1|L3|U|1947
8FLA|1|L3|G|1948
*
8FLA|1|L3|C|2035
8FLA|1|L3|C|2036

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L4

5S ribosomal RNA; 5S rRNA

Chain LC

60S ribosomal protein L18a

Chain SG

60S ribosomal protein L9

Chain SQ

mRNA turnover protein 4 homolog

Chain VB

Leydig cell tumor 10 kDa protein homolog