IL_8FLB_071
3D structure
- PDB id
- 8FLB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State K2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- GACCCCGAAAA*UGAAAAUGGAUGGCGC
- Length
- 27 nucleotides
- Bulged bases
- 8FLB|1|L3|C|1935, 8FLB|1|L3|A|2041, 8FLB|1|L3|U|2044
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FLB_071 not in the Motif Atlas
- Homologous match to IL_8P9A_280
- Geometric discrepancy: 0.5242
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FLB|1|L3|G|1933
8FLB|1|L3|A|1934
8FLB|1|L3|C|1935
8FLB|1|L3|C|1936
8FLB|1|L3|C|1937
8FLB|1|L3|C|1938
8FLB|1|L3|G|1940
8FLB|1|L3|A|1941
8FLB|1|L3|A|1942
8FLB|1|L3|A|1943
8FLB|1|L3|A|1944
*
8FLB|1|L3|U|2038
8FLB|1|L3|G|2039
8FLB|1|L3|A|2040
8FLB|1|L3|A|2041
8FLB|1|L3|A|2042
8FLB|1|L3|A|2043
8FLB|1|L3|U|2044
8FLB|1|L3|G|2045
8FLB|1|L3|G|2046
8FLB|1|L3|A|2047
8FLB|1|L3|U|2048
8FLB|1|L3|G|2049
8FLB|1|L3|G|2050
8FLB|1|L3|C|2051
8FLB|1|L3|G|2052
8FLB|1|L3|C|2053
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L4
- 5S ribosomal RNA; 5S rRNA
- Chain L7
- 60S ribosomal protein L13a
- Chain LN
- 60S ribosomal protein L3
- Chain LT
- 60S ribosomal protein L35a
- Chain SR
- GTP-binding protein 4
- Chain VB
- Leydig cell tumor 10 kDa protein homolog
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