IL_8FLB_131

3D structure

PDB id

8FLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLB_131 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.2367

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8FLB|1|L3|C|4412
8FLB|1|L3|C|4413
8FLB|1|L3|A|4414
8FLB|1|L3|A|4415
8FLB|1|L3|G|4416
*
8FLB|1|L3|C|4426
8FLB|1|L3|G|4427
8FLB|1|L3|A|4428
8FLB|1|L3|C|4429
8FLB|1|L3|G|4430

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SR

GTP-binding protein 4

Chain VB

Leydig cell tumor 10 kDa protein homolog