IL_8FLC_028

3D structure

PDB id

8FLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GCCCG*CC

Length

7 nucleotides

Bulged bases

8FLC|1|L3|C|501, 8FLC|1|L3|C|502, 8FLC|1|L3|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLC_028 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2028

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8FLC|1|L3|G|500
8FLC|1|L3|C|501
8FLC|1|L3|C|502
8FLC|1|L3|C|503
8FLC|1|L3|G|504
*
8FLC|1|L3|C|654
8FLC|1|L3|C|655

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18

Chain SA

60S ribosomal protein L4