IL_8FLC_068

3D structure

PDB id

8FLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

8FLC|1|L3|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLC_068 not in the Motif Atlas

Geometric match to IL_5TBW_037

Geometric discrepancy: 0.3727

The information below is about IL_5TBW_037

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8FLC|1|L3|U|1918
8FLC|1|L3|G|1919
8FLC|1|L3|C|1920
*
8FLC|1|L3|G|2063
8FLC|1|L3|G|2064

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain LC

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L35a

Chain SD

60S ribosomal protein L7