3D structure

PDB id
8FLC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State K3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.76 Å

Loop

Sequence
CCUCGGAUAG*UGCGGAGUG
Length
19 nucleotides
Bulged bases
8FLC|1|L3|C|4757, 8FLC|1|L3|U|4758, 8FLC|1|L3|A|4764, 8FLC|1|L3|G|4870, 8FLC|1|L3|G|4873, 8FLC|1|L3|U|4876
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FLC|1|L3|C|4756
8FLC|1|L3|C|4757
8FLC|1|L3|U|4758
8FLC|1|L3|C|4759
8FLC|1|L3|G|4760
8FLC|1|L3|G|4761
8FLC|1|L3|A|4762
8FLC|1|L3|U|4763
8FLC|1|L3|A|4764
8FLC|1|L3|G|4765
*
8FLC|1|L3|U|4869
8FLC|1|L3|G|4870
8FLC|1|L3|C|4871
8FLC|1|L3|G|4872
8FLC|1|L3|G|4873
8FLC|1|L3|A|4874
8FLC|1|L3|G|4875
8FLC|1|L3|U|4876
8FLC|1|L3|G|4877

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L7
60S ribosomal protein L13a
Chain L8
60S ribosomal protein L14
Chain LC
60S ribosomal protein L18a
Chain SC
60S ribosomal protein L6
Chain SG
60S ribosomal protein L9

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0923 s