IL_8FLC_154

3D structure

PDB id

8FLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8FLC|1|L3|C|4900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLC_154 not in the Motif Atlas

Geometric match to IL_3DIL_001

Geometric discrepancy: 0.3958

The information below is about IL_3DIL_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8FLC|1|L3|G|4899
8FLC|1|L3|C|4900
8FLC|1|L3|G|4901
*
8FLC|1|L3|C|4920
8FLC|1|L3|C|4921

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NK

Protein LLP homolog