IL_8FLD_086

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GG(A2M)G*CU(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLD_086 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2714

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8FLD|1|L3|G|2399
8FLD|1|L3|G|2400
8FLD|1|L3|A2M|2401
8FLD|1|L3|G|2402
*
8FLD|1|L3|C|2802
8FLD|1|L3|U|2803
8FLD|1|L3|OMC|2804
8FLD|1|L3|C|2805

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LR

60S ribosomal protein L34

Chain LW

60S ribosomal protein L37

Chain LZ

60S ribosomal protein L39