IL_8FLD_108

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GCGAAG*UGGAUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLD_108 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1973

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FLD|1|L3|G|2920
8FLD|1|L3|C|2921
8FLD|1|L3|G|2922
8FLD|1|L3|A|2923
8FLD|1|L3|A|2924
8FLD|1|L3|G|2925
*
8FLD|1|L3|U|3272
8FLD|1|L3|G|3273
8FLD|1|L3|G|3274
8FLD|1|L3|A|3275
8FLD|1|L3|U|3276
8FLD|1|L3|C|3277

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L38

Chain NL

Ribosome biogenesis protein NOP53