IL_8FLD_138

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8FLD|1|L3|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLD_138 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3858

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8FLD|1|L3|U|4468
8FLD|1|L3|U|4469
8FLD|1|L3|G|4470
*
8FLD|1|L3|C|4485
8FLD|1|L3|C|4486
8FLD|1|L3|A|4487
8FLD|1|L3|A|4488
8FLD|1|L3|G|4489

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain NK

Protein LLP homolog

Chain SG

60S ribosomal protein L9