IL_8FLD_174

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8FLD|1|L3|U|492

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLD_174 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.3602

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8FLD|1|L3|G|491
8FLD|1|L3|U|492
8FLD|1|L3|G|493
*
8FLD|1|L3|C|661
8FLD|1|L3|C|662

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18

Chain SA

60S ribosomal protein L4