IL_8FLD_196

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

(A2M)UC*(OMG)U(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLD_196 not in the Motif Atlas

Homologous match to IL_8P9A_343

Geometric discrepancy: 0.1202

The information below is about IL_8P9A_343

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

8FLD|1|L3|A2M|4590
8FLD|1|L3|U|4591
8FLD|1|L3|C|4592
*
8FLD|1|L3|OMG|4618
8FLD|1|L3|U|4619
8FLD|1|L3|OMU|4620

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L23

Chain LN

60S ribosomal protein L3

Chain NK

Protein LLP homolog