IL_8FOM_053

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

8FOM|1|QA|A|1492, 8FOM|1|QA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_053 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.278

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8FOM|1|QA|C|1407
8FOM|1|QA|A|1408
8FOM|1|QA|C|1409
*
8FOM|1|QA|G|1491
8FOM|1|QA|A|1492
8FOM|1|QA|A|1493
8FOM|1|QA|G|1494

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain RA

Large subunit ribosomal RNA; LSU rRNA