IL_8FOM_059

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_059 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.0914

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FOM|1|RA|G|24
8FOM|1|RA|U|25
8FOM|1|RA|G|26
8FOM|1|RA|G|27
8FOM|1|RA|A|28
8FOM|1|RA|U|29
8FOM|1|RA|G|30
*
8FOM|1|RA|C|510
8FOM|1|RA|U|511
8FOM|1|RA|G|512
8FOM|1|RA|A|513
8FOM|1|RA|A|514
8FOM|1|RA|A|515
8FOM|1|RA|C|516

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RU

50S ribosomal protein L20

Chain RW

50S ribosomal protein L22