IL_8FOM_064
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FOM_064 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.0571
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8FOM|1|RA|G|188
8FOM|1|RA|G|189
8FOM|1|RA|A|190
8FOM|1|RA|A|191
8FOM|1|RA|C|192
8FOM|1|RA|U|193
8FOM|1|RA|G|194
*
8FOM|1|RA|C|201
8FOM|1|RA|U|202
8FOM|1|RA|C|203
8FOM|1|RA|A|204
8FOM|1|RA|G|205
8FOM|1|RA|U|206
8FOM|1|RA|A|207
8FOM|1|RA|C|208
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R1
- 50S ribosomal protein L28
- Chain R7
- 50S ribosomal protein L34
- Chain R8
- 50S ribosomal protein L35
- Chain RP
- 50S ribosomal protein L15
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