IL_8FOM_125

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8FOM|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_125 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1297

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8FOM|1|RA|C|1686
8FOM|1|RA|G|1687
8FOM|1|RA|U|1688
8FOM|1|RA|A|1689
8FOM|1|RA|A|1690
8FOM|1|RA|C|1691
*
8FOM|1|RA|G|1696
8FOM|1|RA|G|1697
8FOM|1|RA|A|1698
8FOM|1|RA|G|1699
8FOM|1|RA|A|1700
8FOM|1|RA|A|1701
8FOM|1|RA|G|1702

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2