IL_8FOM_319

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8FOM|1|YA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_319 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3963

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8FOM|1|YA|C|2129
8FOM|1|YA|U|2130
8FOM|1|YA|G|2131
8FOM|1|YA|U|2132
8FOM|1|YA|G|2133
8FOM|1|YA|A|2134
8FOM|1|YA|A|2135
8FOM|1|YA|C|2136
*
8FOM|1|YA|G|2155
8FOM|1|YA|G|2156
8FOM|1|YA|G|2157
8FOM|1|YA|A|2158
8FOM|1|YA|G|2159

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA