IL_8FON_124

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8FON|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_124 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.132

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8FON|1|RA|C|1686
8FON|1|RA|G|1687
8FON|1|RA|U|1688
8FON|1|RA|A|1689
8FON|1|RA|A|1690
8FON|1|RA|C|1691
*
8FON|1|RA|G|1696
8FON|1|RA|G|1697
8FON|1|RA|A|1698
8FON|1|RA|G|1699
8FON|1|RA|A|1700
8FON|1|RA|A|1701
8FON|1|RA|G|1702

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2