IL_8FON_140

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_140 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.246

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8FON|1|RA|C|2107
8FON|1|RA|C|2108
8FON|1|RA|U|2109
8FON|1|RA|G|2110
*
8FON|1|RA|C|2179
8FON|1|RA|U|2180
8FON|1|RA|G|2181
8FON|1|RA|G|2182

Current chains

Chain RA

23S rRNA

Nearby chains