IL_8FON_190

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_190 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.14

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8FON|1|XA|G|409
8FON|1|XA|G|410
8FON|1|XA|A|411
8FON|1|XA|A|412
8FON|1|XA|G|413
8FON|1|XA|A|414
8FON|1|XA|A|415
8FON|1|XA|G|416
*
8FON|1|XA|U|427
8FON|1|XA|G|428
8FON|1|XA|U|429
8FON|1|XA|A|430
8FON|1|XA|A|431
8FON|1|XA|A|432
8FON|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4