IL_8FON_310

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_310 not in the Motif Atlas

Homologous match to IL_7A0S_071

Geometric discrepancy: 0.0937

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

8FON|1|YA|G|1933
8FON|1|YA|C|1934
*
8FON|1|YA|G|1964
8FON|1|YA|C|1965
8FON|1|YA|A|1966
8FON|1|YA|C|1967

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA