IL_8FR8_010

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8FR8|1|A|U|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_010 not in the Motif Atlas

Geometric match to IL_4V9F_107

Geometric discrepancy: 0.2679

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

8FR8|1|A|G|369
8FR8|1|A|U|370
8FR8|1|A|G|371
*
8FR8|1|A|C|432
8FR8|1|A|C|433

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains