IL_8FR8_022

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

8FR8|1|A|G|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_022 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.0781

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

8FR8|1|A|G|817
8FR8|1|A|U|818
*
8FR8|1|A|G|843
8FR8|1|A|G|844
8FR8|1|A|C|845

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain K

50S ribosomal protein L2