IL_8FR8_033

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_033 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2668

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FR8|1|A|C|991
8FR8|1|A|C|992
8FR8|1|A|G|993
8FR8|1|A|A|994
8FR8|1|A|U|995
8FR8|1|A|G|996
*
8FR8|1|A|C|1012
8FR8|1|A|U|1013
8FR8|1|A|G|1014
8FR8|1|A|A|1015
8FR8|1|A|C|1016
8FR8|1|A|G|1017

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 2

50S ribosomal protein L25

Chain I

GTP pyrophosphokinase RelA

Chain N

50S ribosomal protein L16