IL_8FR8_041
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GGAAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8FR8|1|A|U|1245, 8FR8|1|A|U|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FR8_041 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.1162
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8FR8|1|A|G|1142
8FR8|1|A|G|1143
8FR8|1|A|A|1144
8FR8|1|A|A|1145
8FR8|1|A|A|1146
8FR8|1|A|A|1147
8FR8|1|A|G|1148
*
8FR8|1|A|C|1242
8FR8|1|A|G|1243
8FR8|1|A|A|1244
8FR8|1|A|U|1245
8FR8|1|A|A|1246
8FR8|1|A|A|1247
8FR8|1|A|U|1248
8FR8|1|A|G|1249
8FR8|1|A|U|1250
8FR8|1|A|A|1251
8FR8|1|A|G|1252
8FR8|1|A|C|1253
8FR8|1|A|G|1254
8FR8|1|A|G|1255
8FR8|1|A|G|1256
8FR8|1|A|G|1257
8FR8|1|A|C|1258
Current chains
- Chain A
- 23S rRNA (3119-MER)
Nearby chains
- Chain 3
- 50S ribosomal protein eL31
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L36
- Chain L
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L13
Coloring options: