IL_8FR8_081

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8FR8|1|A|G|2018, 8FR8|1|A|U|2033, 8FR8|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_081 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.084

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8FR8|1|A|U|2015
8FR8|1|A|G|2016
8FR8|1|A|C|2017
8FR8|1|A|G|2018
8FR8|1|A|A|2019
8FR8|1|A|A|2020
8FR8|1|A|G|2021
*
8FR8|1|A|C|2030
8FR8|1|A|G|2031
8FR8|1|A|A|2032
8FR8|1|A|U|2033
8FR8|1|A|G|2034
8FR8|1|A|U|2035
8FR8|1|A|A|2036
8FR8|1|A|U|2037
8FR8|1|A|A|2038

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain K

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA