IL_8FR8_086

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_086 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.262

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FR8|1|A|A|2073
8FR8|1|A|G|2074
8FR8|1|A|G|2075
8FR8|1|A|A|2076
8FR8|1|A|C|2077
8FR8|1|A|C|2078
*
8FR8|1|A|G|2105
8FR8|1|A|A|2106
8FR8|1|A|G|2107
8FR8|1|A|A|2108
8FR8|1|A|A|2109
8FR8|1|A|U|2110

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains