IL_8FR8_107

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

8FR8|1|A|U|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_107 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.1307

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8FR8|1|A|A|2683
8FR8|1|A|U|2684
8FR8|1|A|C|2685
*
8FR8|1|A|G|2713
8FR8|1|A|G|2714
8FR8|1|A|U|2715
8FR8|1|A|U|2716
8FR8|1|A|U|2717

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 3

50S ribosomal protein eL31

Chain N

50S ribosomal protein L16