IL_8FR8_109
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FR8_109 not in the Motif Atlas
- Homologous match to IL_4WF9_093
- Geometric discrepancy: 0.1706
- The information below is about IL_4WF9_093
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.3
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
8FR8|1|A|C|2690
8FR8|1|A|C|2691
8FR8|1|A|A|2692
8FR8|1|A|A|2693
8FR8|1|A|G|2694
*
8FR8|1|A|C|2704
8FR8|1|A|G|2705
8FR8|1|A|A|2706
8FR8|1|A|C|2707
8FR8|1|A|G|2708
Current chains
- Chain A
- 23S rRNA (3119-MER)
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain I
- GTP pyrophosphokinase RelA
- Chain N
- 50S ribosomal protein L16
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