IL_8FR8_123

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGGAAG*UGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_123 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1607

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

8FR8|1|A|U|3068
8FR8|1|A|G|3069
8FR8|1|A|G|3070
8FR8|1|A|A|3071
8FR8|1|A|A|3072
8FR8|1|A|G|3073
*
8FR8|1|A|U|3086
8FR8|1|A|G|3087
8FR8|1|A|C|3088
8FR8|1|A|A|3089
8FR8|1|A|G|3090

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L19

Chain J

50S ribosomal protein L17