IL_8FR8_135

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUUAAC*GGG

Length

9 nucleotides

Bulged bases

8FR8|1|a|U|52, 8FR8|1|a|A|55

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_135 not in the Motif Atlas

Homologous match to IL_5J7L_003

Geometric discrepancy: 0.0979

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8FR8|1|a|C|51
8FR8|1|a|U|52
8FR8|1|a|U|53
8FR8|1|a|A|54
8FR8|1|a|A|55
8FR8|1|a|C|56
*
8FR8|1|a|G|359
8FR8|1|a|G|360
8FR8|1|a|G|361

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain n

30S ribosomal protein S12