IL_8FR8_161
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- UGAAAAC*GCGUG
- Length
- 12 nucleotides
- Bulged bases
- 8FR8|1|a|U|612
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FR8_161 not in the Motif Atlas
- Geometric match to IL_8C3A_433
- Geometric discrepancy: 0.2818
- The information below is about IL_8C3A_433
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83023.1
- Basepair signature
- cWW-R-L-R-L-R-L-L-L-L
- Number of instances in this motif group
- 1
Unit IDs
8FR8|1|a|U|585
8FR8|1|a|G|586
8FR8|1|a|A|587
8FR8|1|a|A|588
8FR8|1|a|A|589
8FR8|1|a|A|590
8FR8|1|a|C|591
*
8FR8|1|a|G|609
8FR8|1|a|C|610
8FR8|1|a|G|611
8FR8|1|a|U|612
8FR8|1|a|G|613
Current chains
- Chain a
- 16S rRNA (1511-MER)
Nearby chains
- Chain e
- 30S ribosomal protein S4
- Chain i
- 30S ribosomal protein S8
- Chain q
- 30S ribosomal protein S16
- Chain r
- 30S ribosomal protein S17
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