IL_8FR8_188

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8FR8|1|a|C|1383, 8FR8|1|a|A|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_188 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0893

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8FR8|1|a|C|1382
8FR8|1|a|C|1383
8FR8|1|a|G|1384
*
8FR8|1|a|C|1485
8FR8|1|a|A|1486
8FR8|1|a|A|1487
8FR8|1|a|G|1488

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain E

Transfer RNA; tRNA

Chain b

30S ribosomal protein S22

Chain v

mRNA