IL_8FR8_193

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AAAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_193 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1681

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8FR8|1|a|A|1399
8FR8|1|a|A|1400
8FR8|1|a|A|1401
8FR8|1|a|G|1402
*
8FR8|1|a|C|1465
8FR8|1|a|G|1466
8FR8|1|a|A|1467
8FR8|1|a|U|1468

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain b

30S ribosomal protein S22