IL_8FTO_185

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

GGGGU*ACUUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FTO_185 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.289

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8FTO|1|a|G|880
8FTO|1|a|G|881
8FTO|1|a|G|882
8FTO|1|a|G|883
8FTO|1|a|U|884
*
8FTO|1|a|A|892
8FTO|1|a|C|893
8FTO|1|a|U|894
8FTO|1|a|U|895
8FTO|1|a|A|896
8FTO|1|a|C|897

Current chains

Chain a

23S rRNA

Nearby chains