IL_8FZD_009

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZD_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4045

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8FZD|1|A|C|274
8FZD|1|A|C|275
8FZD|1|A|U|276
8FZD|1|A|G|277
8FZD|1|A|A|278
8FZD|1|A|A|279
8FZD|1|A|U|280
8FZD|1|A|C|281
*
8FZD|1|A|G|359
8FZD|1|A|U|360
8FZD|1|A|G|361
8FZD|1|A|A|362
8FZD|1|A|G|363

Current chains

Chain A

23S Ribosomal RNA

Nearby chains